Thesis Defence: Komal Naeem (Master of Science in Biochemistry)

to
Location
Senate Chambers and/or Zoom
Campus
Prince George
Online

You are encouraged to attend the defence. The details of the defence and attendance information is included below: 

Date:  September 23, 2024
Time: 10:00 AM (PT)

Defence mode: Hybrid 
In-Person Attendance: Senate Chambers, UNBC Prince George Campus  
Virtual Attendance: Zoom 

LINK TO JOIN:  Please contact the Office of Graduate Administration for information regarding remote/online attendance. 

To ensure the defence proceeds with no interruptions, please mute your audio and video on entry and do not inadvertently share your screen. The meeting will be locked to entry 5 minutes after it begins: ensure you are on time. 

Thesis entitled:  EFFORTS TOWARDS THE HETEROLOGOUS EXPRESSION OF ECHINODOL AND CONGENERS IN THE HOST ASPERGILLUS ORYZAE

Abstract:  This study aimed to produce small-molecule natural products, specifically the pentacyclic triterpenoids echinodol and echinodone, from the basidiomycete Echinodontium tinctorium using the heterologous host Aspergillus oryzae. Previous studies have shown echinodol and echinodone demonstrate antiproliferative activity and therefore, echinodol isolation would potentially contribute to the field of anticancer drug discovery and development.

The genome of E. tinctorium was retrieved from the 1000 Fungal Genome Project and analyzed using antiSMASH Fungi 7.1 to identify biosynthetic gene clusters (BGCs) containing terpene synthase and cytochrome P450 enzymes with potential for pentacyclic triterpenoid production. Scaffold 69 BGC was selected based on its gene sequences, which showed potential for producing terpene(s) according to limited homology data obtained through NCBI Blast. Gene sequences from Scaffold 69 were obtained using SnapGene, and gene amplification from genomic DNA was performed using PCR. 

The yeast homologous recombination technique was employed to construct plasmids containing genes from E. tinctorium. After multiple trials of yeast homologous recombination, genes 29scaffold69, 31scaffold69, and 30scaffold69 were successfully inserted into amy site of pTYGS-Arg and pTYGS-Ade plasmids respectively. However, there were problems in inserting more than one gene into pTYGS plasmids. In future experiments, the three constructs built in this study with single gene insertion i.e. pTYGS-Arg29scaffold69, pTYGS-Arg31scaffold69, and pTYGS-Ade30scaffold69 can be used for heterologous expression in A. oryzae

While challenges persist, the findings obtained from this study will be extremely valuable in refining these techniques and broadening their application across various areas of biotechnology and pharmaceutical research. 

Examining Committee:  
Chair: Dr. Catharine Schiller, University of Northern British Columbia
Supervisor: Dr. Chow Lee, University of Northern British Columbia  
Co-Supervisor: Dr. Kalindi Morgan, University of Northern British Columbia  
Committee Member: Dr. Brent Murray, University of Northern British Columbia  
Committee Member: Dr. Wai Ming Li, University of Northern British Columbia  
External Examiner: Dr. John Sorensen, University of Manitoba 

Contact Information

Graduate Administration in the Office of the Registrar, University of Northern British Columbia

Email:  grad-office@unbc.ca
Web: https://www2unbc.ca/graduate-programs